Yes the Main Stream Media Gets it Wrong Again (sort of).
Phil Lawler at Catholic Culture disentangles the deceit.
The truth about Copernicus can be found, even in the AP story, by those readers who persist beyond the first few sentences. After the unusual ceremony honoring the great astronomer, an honor guard took the coffin and "lowered it back into the same spot where part of his skull and other bones were found in 2005." The mortal remains of Nicolaus Copernicus now lie exactly where they had lain for most of the past 500 years: in a place of honor, in a Catholic cathedral.
More on Copernicus at Wikipedia